Apart from other things in qur'an (which has a lot more verses than jihad related ones), the followings are most likely all verses regarding jihad :
Jihad Essentials:
Jihad instruction : 2:218, 3:145, 3:157, 3:200, 4:74, 4:76, 4:77, 4:84, 4:95, 4:104, 5:35, 8:60, 8:65, 9:111, 9:120, 49:15, 61:4, 61:11, 66:9
Value of jihad : 2:258, 40:28, 40:29, 40:30, 40:31, 40:32, 40:33, 40:34, 40:35, 40:38, 40:39, 40:40, 40:41, 40:42, 40:43, 40:44
Mujahidin (Jihad’ers)
Mujahidin value : 2:154, 3:142, 3:195, 9:20, 9:88, 9:111, 9:120
Jihad is better then sitting : 3:142, 4:95
Jihad and dealing with risks: 9:120
Working in the way of Allah: 2:218, 2:261, 2:262, 4:74, 4:94, 4:95, 4:100, 5:54, 8:60, 8:72, 8:74, 9:20, 9:41, 9:60, 22:58, 49:15, 57:10
Mujahidin quality / position: 4:95, 4:96, 57:10
Charity in the name of Allah: 2:195, 2:261, 4:95, 8:60, 9:111, 9:121, 61:11
Jihad Bases:
Instruction to be patient in the beginning of preaching : 2:109, 4:77, 6:106, 15:85, 45:14, 50:39, 73:10, 76:24
Permission of war: 2:190, 4:77, 22:39
Obligation of jihad : 2:190, 2:216, 2:244, 5:54, 8:6, 8:8, 8:39, 8:57, 9:5, 9:12, 9:14, 9:29, 9:36, 9:73, 9:123, 47:4, 47:22
Jihad values : 2:193, 2:251, 8:39, 9:13, 9:14, 9:15, 9:16, 47:4
Prohibition of leaving jihad: 8:15, 8:16, 9:24, 9:81
Jihad continues : 2:193, 8:39, 9:5, 9:12, 9:29, 9:36, 9:123
Reluctancy of jihad : 2:216, 4:77, 8:5, 8:6
Those who don’t go fight: 4:72, 9:38, 9:39, 9:120
When jihad become obligation: 47:20, 47:21
War and tactics: 30:3
Exceptions:
Not fight because of obstacles : 9:91, 9:92, 48:17
Ill and weak not go war: 4:95, 9:91
Poor not go war: 9:91, 9:92
Intentions :
To praise Allah’s ayats: 2:190, 2:193, 2:218, 2:244, 3:13, 4:75, 4:76, 4:95, 8:72, 8:74, 9:20, 9:38, 9:41, 47:4, 61:4, 61:11
Sincerity of jihad : 2:190, 47:4
Obedience to leader: 4:59, 24:48
Determination: 2:249, 2:250, 8:45, 33:22
Brave, not cowardice: 4:77, 4:104, 8:15, 8:45, 9:38
Leaders:
Leader obligation: 27:21
Encouraging to jihad: 2:249, 4:76, 4:84, 8:60, 8:65
Consult the experience: 27:32, 27:33
Battleship
Vehicles : 100:1, 100:2, 100:3, 100:4, 100:5
Preparation, physical and mental: 2:249, 4:84, 8:60, 8:65
Using arms: 8:60
Be prepared in any situation: 4:102
War funds: 9:92
Preparing troops: 2:195, 4:95
Charity in Allah’s way: 4:95, 5:12, 8:60, 8:72, 9:20, 9:41, 9:88, 9:111 , 9:121, 49:15, 61:11, 64:17
Asking help from musyrikin : 9:83, 60:1
Totality in battle: 4:71, 9:122
Be careful with betrayer: 4:71, 4:101, 4:102, 8:58, 63:4, 64:14
Digressing while dealing with war: 8:16
Intimidating enemy : 8:57, 8:60
Managing troops: 61:4
Negotiations and Agreements
Cease of agreements: 8:58, 9:2, 9:3
Ethics in war
Prayer for weak and pious : 2:249
Sanction Law of killing women, child, and elders: 2:190
Don’t ruin dead bodies: 2:190
Eye for an eye (retaliate not more than attacked): 16:126, 22:60, 42:40
Don’t burn enemies: 2:190
Attacking: 8:57, 47:4, 66:9
Syuhada (dead as mujahid)
Reward for mujahid: 2:154, 3:157, 3:169, 3:170, 3:171, 3:195, 4:69, 4:74, 9:111, 47:4, 47:5 : 22:58, 47:6
Ceasing War:
Not fight enemies becoming muslim: 2:193
War Result
Cause and requirement to win: 2:249, 2:250, 3:122, 3:125, 3:147, 3:200, 5:23, 8:45, 8:46, 8:65, 8:66, 22:40, 47:7
Jizyah (payment)
Source of jizyah: 9:29
War Captives
Slaving captives : 2:85, 47:4
Freeing captives: 47:4
Treatment to captives: 8:67
Goods from war
The rule of goods treatment: 8:1, 48:19, 48:20
Goos for Those who go war : 8:41 ; 8:69, 48:19, 48:20
Goods portion for those not go war: 48:15
Fai' (goods taken without war)
Stealing goods: 3:161
Distributing fai': 59:7
Agreement :
Peace agreement with musyrikin: 9:8
Meeting agreement with unbeliever: 9:4
Breaking agreement
Broken by muslim: 8:58
Betraying of musyrikin: 9:8, 9:10, 9:12, 9:13
Cease fire : 8:61, 9:4