Denial of Evolution VI.

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on the other hand i've seen NOTHING that supports "things become alive and develop a consciousness".

I have an 18 month old who would disagree.

But from an abiogenesis standpoint, here's an example of some basic chemistry that "came alive:"

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Scripps scientists develop first examples of RNA that replicates itself indefinitely

Scripps Research Institute
Public release date: 9-Jan-2009

Findings could inform biochemical questions about how life began

Now, a pair of Scripps Research Institute scientists has taken a significant step toward answering that question. The scientists have synthesized for the first time RNA enzymes that can replicate themselves without the help of any proteins or other cellular components, and the process proceeds indefinitely.

The work was published on Thursday, January 8, 2008, in Science Express, the advanced, online edition of the journal Science. . . .

A few years after Tracey Lincoln arrived at Scripps Research from Jamaica to pursue her Ph.D., she began exploring the RNA-only replication concept along with her advisor, Professor Gerald Joyce, M.D., Ph.D., who is also Dean of the Faculty at Scripps Research. Their work began with a method of forced adaptation known as in vitro evolution. The goal was to take one of the RNA enzymes already developed in the lab that could perform the basic chemistry of replication, and improve it to the point that it could drive efficient, perpetual self-replication.

Lincoln synthesized in the laboratory a large population of variants of the RNA enzyme that would be challenged to do the job, and carried out a test-tube evolution procedure to obtain those variants that were most adept at joining together pieces of RNA.

Ultimately, this process enabled the team to isolate an evolved version of the original enzyme that is a very efficient replicator, something that many research groups, including Joyce's, had struggled for years to obtain. The improved enzyme fulfilled the primary goal of being able to undergo perpetual replication. "It kind of blew me away," says Lincoln.
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Thanks for the explanation. Sure wouldn't want to get on Rav's bad side. :spank:

wegs is correct.

My bark is worse than my bite though. But then again in the online world, your bark essentially is your bite isn't it? I guess what I'm saying then is that I only bite specially selected individuals. And I've been biting a bit more than usual lately because at some point my tolerance for bullshit took something of a nose dive and hasn't quite leveled out again yet. In fact truth be told it's kinda been a bit of fun, which has no doubt prolonged the exercise. But it's all puppy love for people like you Aqueous ;)
 
Leoold,
i don't believe in an unknown super intelligence without any substance.
on the other hand i've seen NOTHING that supports "things become alive and develop a consciousness".
in my opinion both of the above concepts are ridiculous.

We can see a rudimentary form of intelligence in slime molds. And slime molds have no brain at all. Watch how they figure out how to find food through a maze. Truly remarkable.

http://www.scientificamerican.com/article.cfm?id=brainless-slime-molds
 
jan said:
"As I shared with my professors years ago when I was in college, if all the evidence in the universe turns against creationism, I would be the first to admit it, but I would still be a creationist because that is what the Word of God seems to indicate. Here I must stand."

Here is a perfect example of what I am talking about. He will accepts the facts of science (not the just so stories), and will say them as they are, but he will remain faithful to God's word. He is not denying anything, or trying to turn the facts around to suit himself
Your attempt to restrict science to unclassified lists of objects, and describe scientific theory and reasoning as "just so stories", is denial.

Someone who chooses an a priori belief in the face of "all the evidence in the universe" is specifically and overtly denying all of science - the "facts" included.

Someone who refuses to "say them as they are", these theories and classifications of science, is not accepting the facts of science, but denying them. The facts of science are not piles of disconnected and meaningless data points, which you can sieve out and fit to your arrogant presumptions concerning the Word of God while leaving behind the theory and reasoning within in which they are described, classified, and brought into existence as facts.

And yes, that is a good example of what you are talking about - in Galileo's time, when the Word of God was that the earth did not move (it's changed since), the religious classified Galileo's findings as "Just So Stories", and denied the role of observations in evidence just as you now deny the evidence for Darwinian evolution.
 
leopold said:
yes, aqueous mentioned this earlier in the thread, i asked his opinion on where this "awareness" comes from.
Firstly, note that "awareness" is a label attached by humans (with human "awareness") to the behaviour of an organism, which is that it can "learn".

How this happens is obviously due to some biochemical process--the organism is single-celled, it has no neurons. This kind of "chemical learning" is apparently quite common, a lot of single-celled organisms exhibit this behaviour.
If you consider that every organism has sufficient means to deal with its environment (since otherwise it would already be extinct), it isn't too surprising that the sufficient means includes a way to map the external environment, by "remembering" where sources of food are and where they aren't.
 
Firstly, note that "awareness" is a label attached by humans (with human "awareness") to the behaviour of an organism, which is that it can "learn".

How this happens is obviously due to some biochemical process--the organism is single-celled, it has no neurons. This kind of "chemical learning" is apparently quite common, a lot of single-celled organisms exhibit this behaviour.
If you consider that every organism has sufficient means to deal with its environment (since otherwise it would already be extinct), it isn't too surprising that the sufficient means includes a way to map the external environment, by "remembering" where sources of food are and where they aren't.
aqueous was talking about how single celled lifeforms somehow "sensed" food was nearby and apparently moved towards it.
i don't think it had anything with "learning" but more along the lines of instinct.
i was wondering where this comes from, apparently the entire cell is needed.
 
The basis for this type of single cell learning can be explained with chemical potential within water. If we shake oil and water, vigorously, we can form millions of tiny bubbles of water and oil. The energy we added, due to shaking, increases system wide entropy to form this emulsion. If we stopped shaking, the water and the oil bubbles, will each find like bubbles, and continue to combine until there is only two giant bubbles/phases. These millions of bubbles find each other and combined based on the lowering system free energy, which is mostly surface tension. A cell membrane is mostly oil/lipids and the food sources of cells are based on organic molecules. These create surface tension in water and will attempt to lower free energy. The cell started simple and has evolved ways to speed up the process.

Water, which is not fully included, as an equal in biology and evolution, is the reason I can accept the idea of life changing over time, but not by the random mechanism that is currently used to explain this change. You can't leave out a main variable and use casino math to compensate and expect this to be right.

One way to prove water is a main variable, is to start with a beaker of bacteria. We have organics of life and water. Next, we will remove all the water to see if organics is enough to allow the processes of life. The answer is no. What you will observe is everything will stop dead in its tracks, right down to every single enzyme and microtubule. The DNA will form a crystal.

The next experiment, to see if this is a false positive and this is due to losing the solvent, is to separate the dehydrated dead acting bacteria into many beakers and then add others solvents to each, such as alcohols, ketones, hydrocarbons, aromatic, etc. What you will find is maybe a few stray enzymes will work in a few of the solvents, but no sign of life. So organics plus other things is still dead. There is no way for this to evolve if it is dead and lifeless. It will decay before it ever moves forward.

Once we add water back to the last beaker of dehydrated bacteria, we notice all the reactions begin again and in a short time life is once again restored. Since I like to reason, I would conclude water is the most important molecule, without which nothing will work. We can remove the DNA and many things in the cell will still work, such as in red blood cells.

Any theory of evolution that ignores water can't be right or be more than a stepping stone theory. Science is not about public relationships, dogma or forcing feeding in school, but about being rational. Truth is not important to the religion of evolution.
 
leopold said:
aqueous was talking about how single celled lifeforms somehow "sensed" food was nearby and apparently moved towards it.
i don't think it had anything with "learning" but more along the lines of instinct.
Well, being able to "sense" the presence of food is part of a "learning" process.
Paramecium is a single-celled protozoan that can remember how to negotiate a maze to get to the same place it found food previously.
i was wondering where this comes from, apparently the entire cell is needed.
We still don't fully understand how neurons "remember" or implement memory.
(My personal opinion is that it's related to the maintenance of structural changes, or, in order to store information you need to change the structure of "something" physical, then maintain or "refresh" the changes).

The behaviour of single-celled organisms that causes them to move towards a source of food is call trophism. Cyanobacteria are phototrophic: they move towards a source of light.
 
Wellwisher,
Water, which is not fully included, as an equal in biology and evolution, is the reason I can accept the idea of life changing over time, but not by the random mechanism that is currently used to explain this change. You can't leave out a main variable and use casino math to compensate and expect this to be right.

One way to prove water is a main variable, is to start with a beaker of bacteria. We have organics of life and water. Next, we will remove all the water to see if organics is enough to allow the processes of life. The answer is no. What you will observe is everything will stop dead in its tracks, right down to every single enzyme and microtubule. The DNA will form a crystal.

But I believe that the evolution of the universe itself rest on the ability of chemicals to form compound molecules and if we break down water to its basic elements we end up with Hydrogen, which is the most abundant element in the universe and is wonderfully suited to combining with a range of other chemicals. Oxygen is one of them, another abundant element.

So perhaps the question should be, "are we leaving out H2O from considerations of evolution"? The answer to that obviously is No.

Question: What Is the Most Abundant Element?

Answer: The most abundant element in the universe is hydrogen, which makes up about 3/4 of all matter! Helium makes up most of the remaining 25%. Oxygen is the third most abundant element in the universe. All of the other elements are relatively rare.
http://chemistry.about.com/cs/howthingswork/f/blabundant.htm
 
aqueous was talking about how single celled lifeforms somehow "sensed" food was nearby and apparently moved towards it.
i don't think it had anything with "learning" but more along the lines of instinct.

We call simple tropisms "instinct."
We call complex tropisms "behavior."
We call very complex tropisms "awareness."

They are all points along a continuous line. There's no dividing point, no one place where you can say "we are aware and gorillas are not" or "gorillas are aware but dogs are not."
 
We call simple tropisms "instinct."
We call complex tropisms "behavior."
We call very complex tropisms "awareness."

They are all points along a continuous line. There's no dividing point, no one place where you can say "we are aware and gorillas are not" or "gorillas are aware but dogs are not."

Concisely stated.

Even a flower is aware (senses} the sun and orients itself to receive maximum sunlight.
I believe it is called, "phototropism".
 
So perhaps the question should be, "are we leaving out H2O from considerations of evolution"? The answer to that obviously is No.

I demonstrated the singular importance of water with my bacteria experiment relative to reactions and life. Does the existing model of life and evolution stress water in the same relative proportions as demonstrated by the experiment, or does it merely throw water a bone, but lacks the correct proportions demonstrated by experiment? If it throws water a bone, but fails to take water into consideration for each and all events, how can this model be logically sound? It has to appeal to emotions.

It is like saying the child has a mother and father both raising them, with each necessary in one way or another. Then we ignore one of the parents and use that half theory to explain the child. We do mention the other parent in passing, but fail to give the correct proportions to our explanation due to 19th century bias. Would this be correct? The answer is no, if reason is important. Explain how you can leave out the correct proportions and contributions of water and still be correct and not just a dogmatic religion.
 
wellwisher

Much like biologists will not stress that an organism is breathing air, the need for water in biological functions is so basic it just isn't in question. So, as you fail to mention the gravity that makes it possible for you to walk when you tell someone you are going outside, water is a given in biology. Some things are so basic to a subject that there is no need to constantly mention their importance, you've obviously misinterpreted the lack of emphasis, it is simply that it is as basic as breathing or gravity is to human activity and therefore taken as a given. Water is the medium where life happens, without water there is no life, period. But water is just a chemical compound, you are trying to make it a magical one.

Grumpy:cool:
 
now tell me, how do "primitive animals" develop a faith based healing system such as the placebo effect?
how do you even know primitive animals HAD such a trait?
honestly?
i'm in frikken limbo here.
You are using the past tense. There are more primitive forms in existence today than modern forms. The study of living primitive forms, such as comparative anatomy and genome research, reveals that the slow accumulation of change--as it applies to the evolution of cells, tissues and organs--can be observed over the past 700 million years or more, simply by studying living creatures. The fossil record just helps confirm which forms came first - the principle of succession that Darwin speaks of. This is a huge body of scientific evidence that Creationists ignore. They want to focus on the gross body plan and argue that it completely defines evolution (a few have tried and failed to argue against the evolution of an organ -- such as an eye). But without ignoring the facts of nature, we see over and over again that even tissues, organs and systems have their own evolutionary trajectories, independent of the stages of change in gross features. And all of that can be confirmed by enrolling in a class in biology. That's why the teaching of biology is targeted by Creationists. Actual knowledge is a threat to their agenda.

As to the question of the underlying causes for brain activity, which I think is the intent of what you asked, I was beginning to tell you that there are two functions that dovetail - synapse and endocrine. Synaptic activity is recognized as electrical but that's only half true. The synaptic pulse is a phenomenon of transmission along the axon (strand) of a nerve. But the synapse itself, which can lead to the pulse transmission, is a chemical message. It's less commonly known that the brain sends chemical messages as well, directly to the various organs that it's controlling. Therefore all brain function can be reduced to chemical signaling. Since there is ample evidence of signaling inside cells and among groups of cells we can learn a lot about its evolution by studying microbiology and biochemistry. Shown below is an example of evolution as it applies to the origin of brain signaling. On the left is a living primitive cell which has evolved a flagellum (tail) for motility. In what appears to be the perfect example of what jan ardena has been asking for, with out any discernible change to the gross appearance of the cell, but as a change to its DNA, the cell acquires a colonial behavior. It's not just behavior, but physical and functional changes that give this evolutionary step a critical place in the dawn of first true animals. Individual cells will thus specialize - divide work into specific tasks. Something else happens. A hierarchical layer is built. Now it's the success of the colony that drives its evolution. The pressures are different. But all of that pressure gets transposed back to the DNA of the cell. The cell now figures into Darwin's theory as a building block, not as an individual within a species. The colony operates as the individual subject to selection. This is a topic that's barely been touched on here which is why I mention it.

As for the evolution of brain activity, here you have it, tracing it to its most primitive form. These cells are communicating, by sending chemical messages.

220px-Monosiga_Brevicollis_Phase.jpg
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images
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dysidea-sp-4.jpg

Again, this is just Biology 101. Any Creationist can take the class and cure their denial. On the left, a single collar cell, middle: same cell, adapted for colonial form; right: chamber of a sponge, with collar cells lining the wall, heads attached to the matrix and tails into the water. Incidentally, animal digestive tracts incorporate a homologue of the system seen in sponges. I'm referring to the microvilli of the mouth, throat, intestines etc. Here is a section of tissue. The heads are buried in the connective tissue and the tails - now called villi, with the broad feather-like adaptations seen, extend outward. Chemical messaging is in full swing. For example, the cells are regulated as to whether or not to take up glucose -- upon reception of a message from the pancreas, delivered in the form of insulin.

microvilli04.bmp

leopold said:
on the other hand i've seen NOTHING that supports "things become alive and develop a consciousness".
billvon said:
I have an 18 month old who would disagree.

All of that from two gametes - two molecules, housed in the most primitive of living structures - that of the very early Eukaryotes themselves. Using jan's criteria, look at the minor difference in the collar cell above and spermatazoa. The human ovum can be compared to the cyst cells of algae. In terms of evolution, we are a network of the most primitive of biological structures - single cells. But if not for the perfect code that produces the perfect child through the most elaborate ways of unpacking higher order structures: embryonic development. Then this: living, breathing, with little more than the suck reflex in terms of awareness. That and sense of gastric pain, a startle reflex, and some vague perception of light, sound, and the warmth of the mother.

No, I'm not talking about billvon's child. I'm talking about a kitten, an infant chimp, or a newborn mouse. You may find enormous physical differences in their gross characteristics, but in this regard, the state of awareness at birth, there is very nearly no difference at all. Each newborn of a species merely has the potential for growing that consciousness you speak of. All of that from two molecules. Life from non-life, in the strictest application of biochemistry. "Abiogenesis in utero." Does it really matter that the sperm and egg cells were alive themselves? At its core every fertilization is a mere chemical reaction. Therefore all awareness is at its base a complex of chemical reactions. The rest, the part that drives a belief in an external source of consciousness, is negated by this. Otherwise we would have a memory that begins at the moment of fertilization, not the fuzzy dawning of awareness that happens the way it does. Similarly, if we say all cells are aware, then we would presumably have to "be in touch with" every cell in our bodies. It just doesn't fly. There is no need to invent explanations when there are more explanations available for study and test than any one person can hope to accomplish if they spent their whole life trying to. This is why I asked you, leopold, if you're sure you are not in denial. Your own defense mechanism will bias your answer. But have you even considered the abundance of explanations available to you, or are you avoiding them? That avoidance is the killer. That's the reason for asking yourself if you find it unpleasant to read the explanations for human origins, whether it's one I have given, or anyone else here, or any of the ones you commonly encounter doing a search.

aqueous mentioned this earlier in the thread, i asked his opinion on where this "awareness" comes from.
We've seen different definitions of "awareness" here. Usually, in common speech, we mean something more specific: self-awareness.
This is evidently acquired though stimulation and learning. Before we can try to define consciousness, we have to define all of the underlying structures that grew into place as life evolved. We would hardly call the random collision of two molecules, resulting in the formation of a chemical bond, as "awareness". We would hardly call those chemicals "alive". But even as we speak, countless collisions are taking place in the form of fertilization. From those unaware, un-alive molecules, something very complex yet very predictable is going to happen. Awareness arises from DNA, from the traits carried by the genetic code, which guarantee a particular hierarchy of processes and interactions, layer upon layer, leading to the platform of consciousness, upon which the upper layers, such as self-awareness, are built. But I don't think any of this is a matter of opinion, especially once we subtract out any of the errors in understanding we may have about the facts and evidence of scientific discovery. After all life is extremely robust -- DNA is -- in arriving at a hierarchy of organisms which demonstrate the evolutionary phases of development of the hierarchy that takes us from fertilization to self-awareness.

i was wondering where this comes from [detection of a food particle], apparently the entire cell is needed.
We just had an excellent introduction into protists, and the way slime molds work. We have touched on the amoeba, which apparently engulfs particles randomly. Simpler organisms, such as the cells in the tissues of the human body, merely absorb nutrients through the cell wall. The primitive metazoans (clusters of cells) form a larger surface that increases the odds of encountering nutrients. The forms that followed them - Cnidarians (e.g., jellies), Porifera (sponges-3rd photo at top) and Planarians (flatworms) each demonstrate innovations on the idea of trapping food by cooperation of multiple cells. And they each give evidence of the evolution of traits essential to animals. Sponges produce collagen-the precursor to dermal tissue-as art of the binding matrix that holds the cells together. Cnidarians are the most primitive forms known to have nerves, but first just as a sensor to active the umbrella to close when it detects a particle. Planarians innovate on this, joining the nerves at ganglia, resulting in what is probably the first and most primitive version of a brain. Through study of all of these organisms, there is no question that each cell, tissue, organ and system in modern humans is built from the gradual accumulation of configurations that succeeded in ancestral forms.
 
It has dawned on me as I read through the exchanges in this thread today, that there are secular rebuttals and debates about the world, when it comes to "denying evolution."

Here I sit, realizing that creationism isn't the only rebuttal. I've been accused of living in a bubble and maybe my friends are right. This occurred to me this morning because I read something about a US author named Virginia Heffernan. Are any of u familiar?
She believes in creationism, and is noted as saying "it is my right to believe stories over facts."

It is her right to believe stories over facts. Hats off to her for her candor.

By stories, she means bible stories.

I sat back and thought I don't believe stories over facts (science) but I tend to run everything through the lens of my faith.

I believe in creationism but I also believe in evolution. But I honestly feel a bit naive to think that creationism is the only "counter argument" when it comes to discussing evolution.

So, with that said, I'm going to look at a few recent exchanges here pretending for a moment, that I don't believe in creationism.
:eek:

And just read the "facts." And you know something? Being a lover and pursuer of facts does not run and does not need to run, counter to my faith. I can still love science and still live God...right? (rhetorical question)

Ok, pardon my interjection. But, light bulb moments come in the oddest forms!
This thread, had been enlightening for me in more ways than one.
 

Lol not the most unbiased pub but I read it. :p
(Despite the word "folly" being linked to faith/religion ...I must run out and buy his book /sarcasm lol)

Science has its limits, at least huff agrees there. I think it curious that it stated that ppl will often fill in with faith what science can't explain. I'm not posting verbatim.

I disagree that the two can't coexist. How does believing that there is a Creator behind the scenes diminish the value of science?
:confused:
 
It has dawned on me as I read through the exchanges in this thread today, that there are secular rebuttals and debates about the world, when it comes to "denying evolution.".
I may be misunderstanding you, but you seem to be saying that there are non-creationist rebuttals to evolution. I am not aware of any. If this is what you meant could you furnish som examples?
 
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