Well, all of the most thoughtful Religions hold that God is Transcendent, as it would be almost logically necessary to say so. Just as far as Definition goes, God cannot be part of the Universe without blurring the lines of distinction between the Divine and the Mondane.
However, what we are REALLY interested in is not so much evidence in the favor of proving a God, pointing to physical properties -- Angel Feathers or whatever. What we are REALLY concerned with is evidence in favor of any particular Religion.
Here we would turn to evidence of Providentiality. here we find very few instances where the Transcendent All Highest God was caught adding cookies to any particular cooky jar. But what we do have is annecdotal assertions that particular Saints, Angels or Apparritions, as AGENCIES of God, had interceded for Good and Benefit. Now, of course, ordinary good deeds would not count, except in a human way, much to be appreciated, but there is a large body of anecdotal evidence for Miraculous, supernatural interventions and intercessions.
Indeed, I suspect there is a reason why Atheists always want to get back to the lack of evidence for a Transcendent God, as it pulls attention away from what we have plenty of, and that is evidence in favor of some Religions over others. For instance, Protestantism has gone 500 years without its first Saint or Miracle. But Catholicism has long lists of Christ-Like Saints, as does Sufism and Hinduism. For all the Pro-Buddhist Propaganda, they have done about as well as the Protestants, and using much the same Arguments -- that Miracles are a sign of the Devil or a Temptation away from the True Path.