I have. You see the snake coming, and before it gets too close, you decide whether to stab it, jump, let it reach you, etc.
In this case, the science is more clear the amygdala processes the image the the snake and sets you down a course of action *before* the cerebral cortex even processes the signal. The idea that we make a conscious choice in fight or flight cases is more demonstrably unlikely than in almost any other case.
Deliberation takes to long. If someone throws a punch, you don't have time to look, evaluate, choose and act. Conscious deliberation (assuming arguendo that that is what it is) is there only after the fact, likely to serve as part of a feedback mechanism in case the automatic response was suboptimal. Prior to that effect kicking in, though, your actions are clearly governed by the amygdala.
It works both ways too. The brain can "decide" that a snake in not a threat, and (despite the possibility of a "choice" not to react fearfully), the amygdala can override the conscious part of the brain. For example, if you are afraid of spiders and a friend brings his harmless pet spider over to you and places it in your hand, notwithstnading your "choice" no to react to it, if the spider starts moving you might react anyway, drop the pet spider, scream and jump away.
None of that should be (I assume) troubling, as having free will does not require that all acts be freely chosen. You do not will you heart to beat. So there is no reason to be concerned that we do not will instinctive reactions...except for one tiny hiccup, people often report the feeling that they "decided" to take actions that are clearly instinctive. Their brains do create, in those circumstances, an illusion of conscious choice that the neuroscience dismisses.