From
CERN physics labs in Switzerland says it discovered neutrinos that travel faster than speed of light, September 22nd 2011, 6:25 PM
(Highlighted in red is the portion of the Ellis-based section Mr. Wagner chose to quote)
I for one, think you are misreading this article and substituting your own speculation for the facts of what was attributed to Ellis.
1) Ellis is credited with the sentiment that Special Relativity underlies large parts of modern physics.
2) Ellis is credited with saying "[Special Relativity] has worked perfectly up until now." "Has worked" is the present perfect tense of "to work" and in this case the sense is an action that began in the past and continues in the present.
3) Should Ellis had wanted to indicate that he thought Special Relativity no longer worked predicated on the OPERA discovery which happened before Ellis' comment, he would have used the past perfect tense (i.e. 'SR had worked perfectly up until then.') but Ellis did not elect to send either signal that he thought SR had been discredited.
4) Ellis' could have used the stronger present perfect progressive tense ('has been working perfectly up through now.') but such a choice would necessarily be speculation on what data the future will bring and may be a particularly awkward phrasing for a professional physicist speaking to his expert subject matter.
5) The final two paragraphs are also from Ellis' section of the article and strongly indicate he doesn't believe the current evidence requires discarding SR, contradicting your speculation on what you think Ellis meant to convey.
Even Federal Magistrates can get this wrong. Look at what Google wrote about a similar claim of speculation substituting for evidence in the reasoning of a judge:
http://www.groklaw.net/article.php?story=20110921143117645
Timing and analysis:
http://arxiv.org/abs/1109.4897
The all-important Geodesy:
Neutrino velocity measurement with the OPERA experiment in the CNGS beams, G. Brunetti, PhD thesis, in joint supervision from Université Claude Bernard Lyon-I and Università di Bologna, 2011.
Sadly, I would like to be able to estimate the non-inertial contributions to error, but there is not enough in the papers to evaluate the effect of the rotation of the Earth or the variation in gravitational potential. The GR picture for relativistic beams might differ significantly from the essentially Newtonian survey.