Nuclear power plants have several coolant loops in series (the above diagram shows a general example). The primary coolant loop runs radioisotope contaminated water through the reactor and to a heat exchanger, the secondary loop runs distilled water from the heat exchanger through a turbine and then to another heat exchanger, the third loop can consist of any water, be it river water, sea water, condenser water and takes heat from the final heat exchanger and dumps into the environment: into a river for river water, into the sea for sea water into the air for condenser water. Sea water is of course the cheapest dump, not using fresh water and not needing huge cooling towers.
The water being spoken of in the article you cite in primary and secondary water, the tertiary water from the sea is usually not any where near the reactor core or radiation (its separated by two loops!) dumping it into the containment dome on the other hand likely flooding the reactor its self with salt water is certianly not normal is a irreversible maneuver. Clearly the operates know the fuel elements are melted and the reactor is thus damaged beyond repair, if the news of iodine and cesium detected is true that is clear sign the fuel elements have melted and are directly exposed to the cooling water.