Hi Chinglu.
Mate, if you re-read my post again, you will see that I indeed did address the time dilation aspect. I even addressed the logics (and even modified the scenario to highlight it) which demonstrated that your 'contradiction' was a 'contrived' one based on trivial observation/conclusions, as explained in my post.
Look, I will go even further and prove to you that it is a trivial observation. Consider further where sun-dials are used instead:
The two 'clocks systems' are identical SUN-DIALS. One is moved up and then back as per your original scenario, and then we use those same sun-dials to 'read off' the position of the sun when it is directly overhead. What do we find? The two sun-dials AGREE that the sun is overhead because the 'shadow pointer' is the same for both sun-dials irrespective of what they have experienced beforehand whatever the altitude.
So you see, 'time dilation' is only relevant in the 'mechanical clock' system dependent on pre-determined 'tick rate' according to sun-Earth system 'seconds rate' for the lower position before any motion of any clock up and back.
In both cases, for mechanical clocks and sun-dial types, any 'time dilation' becomes moot when both are again at the same lower position and using that SAME SUN-EARTH system for its reference point FROM THAT MOMENT 'anew', irrespective of any different 'counts' of mechanical mechanical clock or any prior motion of sun-dial clock.
See?
At start, in the mechanical clocks case, the 'standard' is that of the lower position for BOTH clocks. Any 'incorrect' difference is logically and automatically again 'overwritten and understood' when the moved clock is again returned to that 'correct' STANDARD from which both started.
And at start and throughout, in the sun-dial clocks case, there is NEVER any 'difference' in the shadows (except from TRANSIENT trivial angular slanting of light rays from same sun position going to different altitudes), and so both sun-dial clocks will agree at every stage of the experiment, including that the sun is overhead for both of the reunited sun-dials at 12 midday.
Your 'conclusions' are rooted in 'contrived trivialities', and not in the logical/physical essentials which I have actually highlighted in my previous and present post.
Good luck, Chinglu, and better luck in your other discussions.